Detailed information of SNP:
|
SNP ID:
sf0711195149(Gbrowse)
Chromosome: chr07 Position: 11195149 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 58.72% | 41.28% |
| All Indica | 775 | 87.23% | 12.77% |
| All Japonica | 478 | 7.53% | 92.47% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 360 | 85.83% | 14.17% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 204 | 85.78% | 14.22% |
| Temperate Japonica | 317 | 7.57% | 92.43% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711195149 | T->C | LOC_Os07g18890(LOC_Os07g18890.1) | Synonymous |