Detailed information of SNP:
|
SNP ID:
sf0711195269(Gbrowse)
Chromosome: chr07 Position: 11195269 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 57.73% | 42.27% |
| All Indica | 773 | 87.97% | 12.03% |
| All Japonica | 484 | 7.02% | 92.98% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 359 | 87.47% | 12.53% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 202 | 88.12% | 11.88% |
| Temperate Japonica | 323 | 6.81% | 93.19% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711195269 | T->C | LOC_Os07g18890(LOC_Os07g18890.1) | INTRON |