Detailed information of SNP:
|
SNP ID:
sf0711195963(Gbrowse)
Chromosome: chr07 Position: 11195963 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 60.06% | 39.94% |
| All Indica | 686 | 32.07% | 67.93% |
| All Japonica | 491 | 98.37% | 1.63% |
| Aus | 59 | 52.54% | 47.46% |
| Indica I | 328 | 31.10% | 68.90% |
| Indica II | 182 | 30.22% | 69.78% |
| Indica Intermediate | 176 | 35.80% | 64.20% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711195963 | G->A | LOC_Os07g18890(LOC_Os07g18890.1) | SNPs that introduce stop codons |