Detailed information of SNP:
|
SNP ID:
sf0711198618(Gbrowse)
Chromosome: chr07 Position: 11198618 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1250 | 56.16% | 43.84% |
| All Indica | 652 | 28.68% | 71.32% |
| All Japonica | 489 | 97.14% | 2.86% |
| Aus | 61 | 27.87% | 72.13% |
| Indica I | 293 | 33.79% | 66.21% |
| Indica II | 181 | 22.65% | 77.35% |
| Indica Intermediate | 178 | 26.40% | 73.60% |
| Temperate Japonica | 330 | 96.36% | 3.64% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 9 | 33.33% | 66.67% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711198618 | C->A | INTERGENIC | None |