Detailed information of SNP:
|
SNP ID:
sf0711199149(Gbrowse)
Chromosome: chr07 Position: 11199149 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1348 | 87.91% | 12.09% |
| All Indica | 737 | 79.65% | 20.35% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 62 | 83.87% | 16.13% |
| Indica I | 350 | 86.86% | 13.14% |
| Indica II | 194 | 64.43% | 35.57% |
| Indica Intermediate | 193 | 81.87% | 18.13% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711199149 | T->C | INTERGENIC | None |