Detailed information of SNP:
|
SNP ID:
sf0711200798(Gbrowse)
Chromosome: chr07 Position: 11200798 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 94.90% | 5.10% |
| All Indica | 795 | 96.10% | 3.90% |
| All Japonica | 496 | 93.35% | 6.65% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 334 | 90.72% | 9.28% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711200798 | C->T | LOC_Os07g18900(LOC_Os07g18900.1) | INTRON |