Detailed information of SNP:
|
SNP ID:
sf0711200802(Gbrowse)
Chromosome: chr07 Position: 11200802 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 93.98% | 6.02% |
| All Indica | 780 | 94.62% | 5.38% |
| All Japonica | 494 | 93.32% | 6.68% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 207 | 85.02% | 14.98% |
| Indica Intermediate | 202 | 95.54% | 4.46% |
| Temperate Japonica | 332 | 90.66% | 9.34% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711200802 | C->A | LOC_Os07g18900(LOC_Os07g18900.1) | INTRON |