Detailed information of SNP:
|
SNP ID:
sf0711203479(Gbrowse)
Chromosome: chr07 Position: 11203479 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 94.62% | 5.38% |
| All Indica | 762 | 92.39% | 7.61% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 62 | 77.42% | 22.58% |
| Indica I | 352 | 91.48% | 8.52% |
| Indica II | 205 | 93.17% | 6.83% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711203479 | C->T | LOC_Os07g18910(LOC_Os07g18910.1) | INTRON |