Detailed information of SNP:
|
SNP ID:
sf0711310650(Gbrowse)
Chromosome: chr07 Position: 11310650 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1192 | 55.20% | 44.80% |
| All Indica | 628 | 28.03% | 71.97% |
| All Japonica | 475 | 94.95% | 5.05% |
| Aus | 44 | 15.91% | 84.09% |
| Indica I | 279 | 33.33% | 66.67% |
| Indica II | 179 | 21.79% | 78.21% |
| Indica Intermediate | 170 | 25.88% | 74.12% |
| Temperate Japonica | 316 | 94.30% | 5.70% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 33 | 57.58% | 42.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711310650 | C->T | INTERGENIC | None |