Detailed information of SNP:
|
SNP ID:
sf0711311786(Gbrowse)
Chromosome: chr07 Position: 11311786 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 53.87% | 46.13% |
| All Indica | 779 | 87.16% | 12.84% |
| All Japonica | 495 | 2.83% | 97.17% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 360 | 86.11% | 13.89% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 206 | 82.52% | 17.48% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711311786 | T->C | INTERGENIC | None |