Detailed information of SNP:
|
SNP ID:
sf0711371439(Gbrowse)
Chromosome: chr07 Position: 11371439 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 77.16% | 22.84% |
| All Indica | 741 | 60.05% | 39.95% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 351 | 62.11% | 37.89% |
| Indica II | 191 | 50.26% | 49.74% |
| Indica Intermediate | 199 | 65.83% | 34.17% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711371439 | A->C | LOC_Os07g19200(LOC_Os07g19200.1) | INTRON |