Detailed information of SNP:
|
SNP ID:
sf0711373434(Gbrowse)
Chromosome: chr07 Position: 11373434 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1316 | 52.36% | 47.64% |
| All Indica | 717 | 82.71% | 17.29% |
| All Japonica | 488 | 5.94% | 94.06% |
| Aus | 56 | 73.21% | 26.79% |
| Indica I | 331 | 84.59% | 15.41% |
| Indica II | 193 | 83.94% | 16.06% |
| Indica Intermediate | 193 | 78.24% | 21.76% |
| Temperate Japonica | 328 | 7.62% | 92.38% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711373434 | C->T | LOC_Os07g19200(LOC_Os07g19200.1) | Non-Synonymous SNP |