Detailed information of SNP:
|
SNP ID:
sf0711374100(Gbrowse)
Chromosome: chr07 Position: 11374100 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 57.78% | 42.22% |
| All Indica | 786 | 89.06% | 10.94% |
| All Japonica | 490 | 6.94% | 93.06% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 370 | 92.16% | 7.84% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 206 | 80.58% | 19.42% |
| Temperate Japonica | 330 | 8.48% | 91.52% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711374100 | C->T | INTERGENIC | None |