Detailed information of SNP:
|
SNP ID:
sf0711376062(Gbrowse)
Chromosome: chr07 Position: 11376062 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1275 | 83.84% | 16.16% |
| All Indica | 666 | 70.42% | 29.58% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 96.55% | 3.45% |
| Indica I | 309 | 63.43% | 36.57% |
| Indica II | 175 | 73.14% | 26.86% |
| Indica Intermediate | 182 | 79.67% | 20.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711376062 | G->A | INTERGENIC | None |