Detailed information of SNP:
|
SNP ID:
sf0711408779(Gbrowse)
Chromosome: chr07 Position: 11408779 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 66.96% | 33.04% |
| All Indica | 771 | 67.19% | 32.81% |
| All Japonica | 497 | 68.41% | 31.59% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 359 | 59.05% | 40.95% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 203 | 60.10% | 39.90% |
| Temperate Japonica | 335 | 57.01% | 42.99% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711408779 | T->C | LOC_Os07g19274(LOC_Os07g19274.1) | Non-Synonymous SNP |