Detailed information of SNP:
|
SNP ID:
sf0711409822(Gbrowse)
Chromosome: chr07 Position: 11409822 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1301 | 61.18% | 38.82% |
| All Indica | 690 | 77.83% | 22.17% |
| All Japonica | 496 | 32.86% | 67.14% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 321 | 78.82% | 21.18% |
| Indica II | 178 | 70.79% | 29.21% |
| Indica Intermediate | 191 | 82.72% | 17.28% |
| Temperate Japonica | 335 | 43.88% | 56.12% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711409822 | C->T | INTERGENIC | None |