Detailed information of SNP:
|
SNP ID:
sf0711418122(Gbrowse)
Chromosome: chr07 Position: 11418122 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 94.57% | 5.43% |
| All Indica | 768 | 90.62% | 9.38% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 362 | 96.69% | 3.31% |
| Indica II | 202 | 79.70% | 20.30% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711418122 | C->T | LOC_Os07g19290(LOC_Os07g19290.1) | INTRON |