Detailed information of SNP:
|
SNP ID:
sf0711573259(Gbrowse)
Chromosome: chr07 Position: 11573259 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 58.59% | 41.41% |
| All Indica | 790 | 92.15% | 7.85% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711573259 | T->C | INTERGENIC | None |