Detailed information of SNP:
|
SNP ID:
sf0711573510(Gbrowse)
Chromosome: chr07 Position: 11573510 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 50.55% | 49.45% |
| All Indica | 768 | 82.81% | 17.19% |
| All Japonica | 492 | 1.02% | 98.98% |
| Aus | 61 | 59.02% | 40.98% |
| Indica I | 358 | 86.87% | 13.13% |
| Indica II | 206 | 85.92% | 14.08% |
| Indica Intermediate | 204 | 72.55% | 27.45% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 91 | 1.10% | 98.90% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711573510 | T->C | INTERGENIC | None |