Detailed information of SNP:
|
SNP ID:
sf0711638306(Gbrowse)
Chromosome: chr07 Position: 11638306 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 69.83% | 30.17% |
| All Indica | 792 | 71.09% | 28.91% |
| All Japonica | 497 | 68.61% | 31.39% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 372 | 66.94% | 33.06% |
| Indica II | 210 | 86.67% | 13.33% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711638306 | A->G | INTERGENIC | None |