Detailed information of SNP:
|
SNP ID:
sf0711675004(Gbrowse)
Chromosome: chr07 Position: 11675004 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1171 | 87.28% | 12.72% |
| All Indica | 692 | 87.57% | 12.43% |
| All Japonica | 387 | 85.79% | 14.21% |
| Aus | 53 | 90.57% | 9.43% |
| Indica I | 310 | 87.10% | 12.90% |
| Indica II | 200 | 90.00% | 10.00% |
| Indica Intermediate | 182 | 85.71% | 14.29% |
| Temperate Japonica | 243 | 84.36% | 15.64% |
| Tropical Japonica | 85 | 90.59% | 9.41% |
| Japonica Intermediate | 59 | 84.75% | 15.25% |
| Group VI/Aromatic | 6 | 83.33% | 16.67% |
| Intermediate | 33 | 93.94% | 6.06% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711675004 | T->C | INTERGENIC | None |