Detailed information of SNP:
|
SNP ID:
sf0711697109(Gbrowse)
Chromosome: chr07 Position: 11697109 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 70.64% | 29.36% |
| All Indica | 797 | 95.98% | 4.02% |
| All Japonica | 497 | 27.57% | 72.43% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 36.42% | 63.58% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711697109 | C->T | INTERGENIC | None |