Detailed information of SNP:
|
SNP ID:
sf0711711763(Gbrowse)
Chromosome: chr07 Position: 11711763 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 98.17% | 1.83% |
| All Indica | 755 | 97.09% | 2.91% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 358 | 96.37% | 3.63% |
| Indica II | 200 | 99.50% | 0.50% |
| Indica Intermediate | 197 | 95.94% | 4.06% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711711763 | G->A | LOC_Os07g20300(LOC_Os07g20300.1) | Non-Synonymous SNP |