Detailed information of SNP:
|
SNP ID:
sf0711711803(Gbrowse)
Chromosome: chr07 Position: 11711803 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 91.81% | 8.19% |
| All Indica | 670 | 84.63% | 15.37% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 312 | 76.28% | 23.72% |
| Indica II | 178 | 93.26% | 6.74% |
| Indica Intermediate | 180 | 90.56% | 9.44% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711711803 | G->A | LOC_Os07g20300(LOC_Os07g20300.1) | Synonymous |