Detailed information of SNP:
|
SNP ID:
sf0711715222(Gbrowse)
Chromosome: chr07 Position: 11715222 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 71.10% | 28.90% |
| All Indica | 797 | 95.36% | 4.64% |
| All Japonica | 497 | 29.98% | 70.02% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 39.40% | 60.60% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711715222 | T->C | INTERGENIC | None |