Detailed information of SNP:
|
SNP ID:
sf0711745382(Gbrowse)
Chromosome: chr07 Position: 11745382 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 96.84% | 3.16% |
| All Indica | 778 | 96.14% | 3.86% |
| All Japonica | 494 | 97.98% | 2.02% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 368 | 96.47% | 3.53% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 202 | 93.56% | 6.44% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711745382 | G->A | LOC_Os07g20360(LOC_Os07g20360.1) | INTRON |