Detailed information of SNP:
|
SNP ID:
sf0711759158(Gbrowse)
Chromosome: chr07 Position: 11759158 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 97.85% | 2.15% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 471 | 93.63% | 6.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 91.98% | 8.02% |
| Tropical Japonica | 84 | 98.81% | 1.19% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711759158 | A->T | INTERGENIC | None |