Detailed information of SNP:
|
SNP ID:
sf0711804873(Gbrowse)
Chromosome: chr07 Position: 11804873 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 57.12% | 42.88% |
| All Indica | 794 | 90.05% | 9.95% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711804873 | G->A | LOC_Os07g20440(LOC_Os07g20440.1) | INTRON |