Detailed information of SNP:
|
SNP ID:
sf0711804916(Gbrowse)
Chromosome: chr07 Position: 11804916 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 62.38% | 37.62% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 490 | 4.08% | 95.92% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 330 | 3.33% | 96.67% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711804916 | A->G | LOC_Os07g20440(LOC_Os07g20440.1) | INTRON |