Detailed information of SNP:
|
SNP ID:
sf0711809593(Gbrowse)
Chromosome: chr07 Position: 11809593 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 54.73% | 45.27% |
| All Indica | 789 | 85.68% | 14.32% |
| All Japonica | 489 | 5.73% | 94.27% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 371 | 88.95% | 11.05% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 205 | 76.59% | 23.41% |
| Temperate Japonica | 328 | 7.32% | 92.68% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711809593 | T->G | LOC_Os07g20450(LOC_Os07g20450.1) | Non-Synonymous SNP |