Detailed information of SNP:
|
SNP ID:
sf0711830645(Gbrowse)
Chromosome: chr07 Position: 11830645 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 96.69% | 3.31% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711830645 | A->G | LOC_Os07g20490(LOC_Os07g20490.1) | Synonymous |