Detailed information of SNP:
|
SNP ID:
sf0711877672(Gbrowse)
Chromosome: chr07 Position: 11877672 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 94.53% | 5.47% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 487 | 84.60% | 15.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 89 | 32.58% | 67.42% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711877672 | C->T | LOC_Os07g20560(LOC_Os07g20560.1) | Non-Synonymous SNP |