Detailed information of SNP:
|
SNP ID:
sf0711905138(Gbrowse)
Chromosome: chr07 Position: 11905138 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.94% | 13.06% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 495 | 87.88% | 12.12% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 82.93% | 17.07% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711905138 | G->A | INTERGENIC | None |