Detailed information of SNP:
|
SNP ID:
sf0711955536(Gbrowse)
Chromosome: chr07 Position: 11955536 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 96.09% | 3.91% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 484 | 89.26% | 10.74% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 87.42% | 12.58% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711955536 | C->T | LOC_Os07g20690(LOC_Os07g20690.1) | Non-Synonymous SNP |