Detailed information of SNP:
|
SNP ID:
sf0711960244(Gbrowse)
Chromosome: chr07 Position: 11960244 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 92.16% | 7.84% |
| All Indica | 792 | 98.11% | 1.89% |
| All Japonica | 468 | 82.05% | 17.95% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 308 | 74.35% | 25.65% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 10 | 50.00% | 50.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711960244 | G->A | INTERGENIC | None |