Detailed information of SNP:
|
SNP ID:
sf0711960669(Gbrowse)
Chromosome: chr07 Position: 11960669 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 92.14% | 7.86% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 469 | 78.46% | 21.54% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 309 | 69.90% | 30.10% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711960669 | T->A | INTERGENIC | None |