Detailed information of SNP:
|
SNP ID:
sf0711962827(Gbrowse)
Chromosome: chr07 Position: 11962827 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 96.88% | 3.12% |
| All Indica | 790 | 99.24% | 0.76% |
| All Japonica | 464 | 95.91% | 4.09% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 202 | 97.03% | 2.97% |
| Temperate Japonica | 302 | 94.70% | 5.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711962827 | C->T | INTERGENIC | None |