Detailed information of SNP:
|
SNP ID:
sf0711996478(Gbrowse)
Chromosome: chr07 Position: 11996478 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 71.50% | 28.50% |
| All Indica | 795 | 94.21% | 5.79% |
| All Japonica | 466 | 32.40% | 67.60% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 320 | 20.62% | 79.38% |
| Tropical Japonica | 85 | 71.76% | 28.24% |
| Japonica Intermediate | 61 | 39.34% | 60.66% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711996478 | G->C | LOC_Os07g20730(LOC_Os07g20730.1) | INTRON |