Detailed information of SNP:



SNP ID: sf0711999404(Gbrowse)

Chromosome: chr07

Position: 11999404
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1406 93.24% 6.76%
All Indica795 99.62% 0.38%
All Japonica490 82.24% 17.76%
Aus67 100.00% 0.00%
Indica I375 99.47% 0.53%
Indica II213 100.00% 0.00%
Indica Intermediate207 99.52% 0.48%
Temperate Japonica329 76.60% 23.40%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate67 85.07% 14.93%
Group VI/Aromatic12 66.67% 33.33%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0711999404 C->T INTERGENIC None