Detailed information of SNP:
|
SNP ID:
sf0711999404(Gbrowse)
Chromosome: chr07 Position: 11999404 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 93.24% | 6.76% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 490 | 82.24% | 17.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 329 | 76.60% | 23.40% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711999404 | C->T | INTERGENIC | None |