Detailed information of SNP:
|
SNP ID:
sf0712029143(Gbrowse)
Chromosome: chr07 Position: 12029143 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 86.46% | 13.54% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 485 | 64.54% | 35.46% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 326 | 59.82% | 40.18% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712029143 | A->T | INTERGENIC | None |