Detailed information of SNP:
|
SNP ID:
sf0712049321(Gbrowse)
Chromosome: chr07 Position: 12049321 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1240 | 57.18% | 42.82% |
| All Indica | 642 | 23.99% | 76.01% |
| All Japonica | 492 | 97.97% | 2.03% |
| Aus | 57 | 66.67% | 33.33% |
| Indica I | 286 | 22.38% | 77.62% |
| Indica II | 179 | 20.11% | 79.89% |
| Indica Intermediate | 177 | 30.51% | 69.49% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712049321 | T->C | LOC_Os07g20830(LOC_Os07g20830.1) | INTRON |