Detailed information of SNP:
|
SNP ID:
sf0712074064(Gbrowse)
Chromosome: chr07 Position: 12074064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 91.24% | 8.76% |
| All Indica | 761 | 90.67% | 9.33% |
| All Japonica | 489 | 96.11% | 3.89% |
| Aus | 57 | 63.16% | 36.84% |
| Indica I | 367 | 94.01% | 5.99% |
| Indica II | 199 | 84.92% | 15.08% |
| Indica Intermediate | 195 | 90.26% | 9.74% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 83.33% | 16.67% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712074064 | G->A | INTERGENIC | None |