Detailed information of SNP:
|
SNP ID:
sf0712083033(Gbrowse)
Chromosome: chr07 Position: 12083033 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 50.83% | 49.17% |
| All Indica | 736 | 78.67% | 21.33% |
| All Japonica | 487 | 5.54% | 94.46% |
| Aus | 56 | 83.93% | 16.07% |
| Indica I | 340 | 80.00% | 20.00% |
| Indica II | 200 | 83.50% | 16.50% |
| Indica Intermediate | 196 | 71.43% | 28.57% |
| Temperate Japonica | 326 | 2.76% | 97.24% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712083033 | C->A | INTERGENIC | None |