Detailed information of SNP:
|
SNP ID:
sf0712095400(Gbrowse)
Chromosome: chr07 Position: 12095400 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 56.84% | 43.16% |
| All Indica | 743 | 32.44% | 67.56% |
| All Japonica | 491 | 98.17% | 1.83% |
| Aus | 64 | 20.31% | 79.69% |
| Indica I | 342 | 40.64% | 59.36% |
| Indica II | 203 | 22.17% | 77.83% |
| Indica Intermediate | 198 | 28.79% | 71.21% |
| Temperate Japonica | 330 | 98.79% | 1.21% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 10 | 60.00% | 40.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712095400 | T->C | INTERGENIC | None |