Detailed information of SNP:
|
SNP ID:
sf0712107769(Gbrowse)
Chromosome: chr07 Position: 12107769 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 62.17% | 37.83% |
| All Indica | 790 | 96.46% | 3.54% |
| All Japonica | 484 | 4.55% | 95.45% |
| Aus | 62 | 85.48% | 14.52% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 327 | 3.98% | 96.02% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 10 | 20.00% | 80.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712107769 | T->C | INTERGENIC | None |