Detailed information of SNP:
|
SNP ID:
sf0712110511(Gbrowse)
Chromosome: chr07 Position: 12110511 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 96.22% | 3.78% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 485 | 91.96% | 8.04% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 323 | 88.54% | 11.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712110511 | T->A | INTERGENIC | None |