Detailed information of SNP:
|
SNP ID:
sf0712114257(Gbrowse)
Chromosome: chr07 Position: 12114257 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 58.12% | 41.88% |
| All Indica | 793 | 92.81% | 7.19% |
| All Japonica | 492 | 2.24% | 97.76% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 331 | 2.11% | 97.89% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712114257 | T->C | INTERGENIC | None |