Detailed information of SNP:
|
SNP ID:
sf0712114549(Gbrowse)
Chromosome: chr07 Position: 12114549 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 62.88% | 37.12% |
| All Indica | 794 | 95.84% | 4.16% |
| All Japonica | 485 | 8.04% | 91.96% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 323 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712114549 | C->T | INTERGENIC | None |