Detailed information of SNP:
|
SNP ID:
sf0712114733(Gbrowse)
Chromosome: chr07 Position: 12114733 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 64.70% | 35.30% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 478 | 8.58% | 91.42% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 318 | 9.12% | 90.88% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 8 | 12.50% | 87.50% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712114733 | G->C | INTERGENIC | None |