Detailed information of SNP:
|
SNP ID:
sf0712115238(Gbrowse)
Chromosome: chr07 Position: 12115238 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 59.48% | 40.52% |
| All Indica | 792 | 91.67% | 8.33% |
| All Japonica | 479 | 5.22% | 94.78% |
| Aus | 61 | 86.89% | 13.11% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 207 | 85.02% | 14.98% |
| Temperate Japonica | 317 | 5.99% | 94.01% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712115238 | G->T | INTERGENIC | None |